Brite menu organism menu download htext download json. The kegg orthology is a set of pathway ids that are not to be confused with the kegg ortholog ids. Publication info with pmid, title, and journal name. A functional ortholog is manually defined in the context of kegg molecular networks, namely, kegg pathway maps, brite hierarchies and kegg modules. The most uptodate version of this software can be downloaded at. The detailed table is the new preferred formatplease help us complete it. Usually this column indicates glycan reactionchemical reaction pair. Assuming that the kegg ortholog number is known for a single gene, the. Download current kegg reaction and kegg compound database.
Zoophytebase an open access and searchable database of a coral genome. The weekly updated ftp site contains the entire set of kegg data as summarized in the following readme files. The kegg pathway maps, brite hierarchies and kegg modules are developed as networks of ko nodes, representing highlevel functions of the cell and the organism. List of orthology databases if you know of any other database, please edit this page directly or contact us. Can anyone suggest a way to download kegg pathway database. Kegg orthology is a database of kegg pathway ortholog groups, and contains the pathways at the core of the kegg representation system. Molecular functions of genes and proteins are associated with ortholog groups and stored in the kegg orthology ko database.
Im wondering how to group k numbers k identifiers into ko categories as different genes might be involved in the same metabolisms and it would. The convertion of the kidentifier to kocategories can be achived by the use of the controlled dictionary used by kegg. Webgestalt, enrichr and enrichnet are other websites with increasing popularity see table 1. Kegg orthology ko database integbio database catalog. The ko kegg orthology database is a database of molecular functions represented in terms of functional orthologs. Pdf kegg orthologybased annotation of the predicted.